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ddPCR surpasses classical qPCR technology in quantitating bacteria and fungi in the environment 期刊论文
MOLECULAR ECOLOGY RESOURCES, 2022, 卷号: 22, 期号: 7, 页码: 2587-2598
Authors:  Wang, Danrui;  Wang, Shang;  Du, Xiongfeng;  He, Qing;  Liu, Yue;  Wang, Zhujun;  Feng, Kai;  Li, Yan;  Deng, Ye
View  |  Adobe PDF(3602Kb)  |  Favorite  |  View/Download：8/4  |  Submit date：2022/11/09
DROPLET DIGITAL PCR  MICROBIAL COMMUNITIES  INHIBITION  QUANTIFICATION  DNA  BIOMASS  CARBON  DILUTION  IMPACTS  TAQMAN  
典型有机固废厌氧消化微生物研究现状与发展方向 期刊论文
生物工程学报, 2021, 卷号: 37, 期号: 10, 页码: 3425-3438
Authors:  杨兴盛;  王尚;  何晴;  王朱珺;  张照婧;  姜成英;  马黎萍;  刘贤伟;  胡宝兰;  李咏梅;  邓晔
View  |  Adobe PDF(3115Kb)  |  Favorite  |  View/Download：62/25  |  Submit date：2021/12/30
微生物组  厌氧消化  有机固废  互营代谢  互作  
High-Throughput Single-Cell Technology Reveals the Contribution of Horizontal Gene Transfer to Typical Antibiotic Resistance Gene Dissemination in Wastewater Treatment Plants 期刊论文
ENVIRONMENTAL SCIENCE & TECHNOLOGY, 2021, 卷号: 55, 期号: 17, 页码: 11824-11834
Authors:  Wei, Ziyan;  Feng, Kai;  Wang, Zhujun;  Zhang, Yu;  Yang, Min;  Zhu, Yong-Guan;  Virta, Marko P. J.;  Deng, Ye
View  |  Adobe PDF(4348Kb)  |  Favorite  |  View/Download：63/18  |  Submit date：2021/12/23
antibiotic resistance genes  horizontal gene transfer  vertical gene transfer  bacterial hosts  epicPCR  
Sampling cores and sequencing depths affected the measurement of microbial diversity in soil quadrats 期刊论文
SCIENCE OF THE TOTAL ENVIRONMENT, 2021, 卷号: 767, 页码: -
Authors:  Li, Shuzhen;  Deng, Ye;  Du, Xiongfeng;  Feng, Kai;  Wu, Yueni;  He, Qing;  Wang, Zhujun;  Liu, Yangying;  Wang, Danrui;  Peng, Xi;  Zhang, Zhaojing;  Escalas, Arthur;  Qu, Yuanyuan
View  |  Adobe PDF(2629Kb)  |  Favorite  |  View/Download：51/28  |  Submit date：2021/12/23
Sampling strategy  alpha diversity  Pooling  Biological replicate  Common species  Hill number  
Effects of graphene oxide on PCR amplification for microbial community survey 期刊论文
BMC MICROBIOLOGY, 2020, 卷号: 20, 期号: 1, 页码: 1-11
Authors:  Li, Shuzhen;  Wang, Zhujun;  Wang, Yuanyuan;  Song, Maoyong;  Lu, Guangxin;  Dang, Ning;  Yin, Huaqun;  Qu, Yuanyuan;  Deng, Ye
View  |  Adobe PDF(1388Kb)  |  Favorite  |  View/Download：77/25  |  Submit date：2021/09/15
Oxidized graphene  Bacteria  Fungi  Chimera  Community composition  
ARDEP, a Rapid Degenerate Primer Design Pipeline Based onk-mers for Amplicon Microbiome Studies 期刊论文
INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH, 2020, 卷号: 17, 期号: 16, 页码: 1-9
Authors:  Wu, Yueni;  Feng, Kai;  Wei, Ziyan;  Wang, Zhujun;  Deng, Ye
View  |  Adobe PDF(1400Kb)  |  Favorite  |  View/Download：68/21  |  Submit date：2021/09/15
bioinformatic program  primer design  k-mer  analysis platform  primer assessment  
农牧交错带草地土壤剖面微生物总量、多样性和互作网络的垂直分布特征 期刊论文
微生物学通报, 2020, 卷号: 47, 期号: 09, 页码: 2789-2806
Authors:  杜雄峰;  厉舒祯;  冯凯;  何晴;  王朱珺;  吴悦妮;  王丹蕊;  彭玺;  王尚;  邓晔
View  |  Adobe PDF(3067Kb)  |  Favorite  |  View/Download：94/34  |  Submit date：2021/07/16
农牧交错带  草地  原核微生物  多样性  分子生态网络  土壤深度  
16S/18S/ITS扩增子高通量测序引物的生物信息学评估和改进 期刊论文
微生物学通报, 2020, 卷号: 47, 期号: 09, 页码: 2897-2912
Authors:  吴悦妮;  冯凯;  厉舒祯;  王朱珺;  张照婧;  邓晔
View  |  Adobe PDF(1563Kb)  |  Favorite  |  View/Download：119/65  |  Submit date：2021/07/16
扩增子测序  16S rRNA基因  ITS基因  18S rRNA基因  PCR扩增  引物  引物覆盖度  引物特异性  扩增产物片段长度  
Niche width of above- and below-ground organisms varied in predicting biodiversity profiling along a latitudinal gradient 期刊论文
MOLECULAR ECOLOGY, 2020, 卷号: 29, 期号: 10, 页码: 1890-1902
Authors:  Feng, Kai;  Wang, Shang;  Wei, Ziyan;  Wang, Zhujun;  Zhang, Zhaojing;  Wu, Yueni;  Zhang, Yuguang;  Deng, Ye
View  |  Adobe PDF(2005Kb)  |  Favorite  |  View/Download：79/35  |  Submit date：2021/09/15
above- and below-ground ecology  biodiversity profiling  biogeographical distribution  forest ecosystem  niche width model  plants and microbes  
Steeper spatial scaling patterns of subsoil microbiota are shaped by deterministic assembly process 期刊论文
MOLECULAR ECOLOGY, 2020, 卷号: 30, 期号: 4, 页码: 1072-1085
Authors:  Du, Xiongfeng;  Deng, Ye;  Li, Shuzhen;  Escalas, Arthur;  Feng, Kai;  He, Qing;  Wang, Zhujun;  Wu, Yueni;  Wang, Danrui;  Peng, Xi;  Wang, Shang
Adobe PDF(1006Kb)  |  Favorite  |  View/Download：81/34  |  Submit date：2021/09/15
assembly mechanism  biodiversity  biogeography  grassland  prokaryote  spatial scaling