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中国科学院生态环境研究中心
KMS of Research Center for Eco-Environmental Sciences, CAS
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中国科学院环境生物... [12]
环境水质学国家重点实... [1]
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ddPCR surpasses classical qPCR technology in quantitating bacteria and fungi in the environment
期刊论文
MOLECULAR ECOLOGY RESOURCES, 2022, 卷号: 22, 期号: 7, 页码: 2587-2598
Authors:
Wang, Danrui
;
Wang, Shang
;
Du, Xiongfeng
;
He, Qing
;
Liu, Yue
;
Wang, Zhujun
;
Feng, Kai
;
Li, Yan
;
Deng, Ye
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Submit date:2022/11/09
DROPLET DIGITAL PCR
MICROBIAL COMMUNITIES
INHIBITION
QUANTIFICATION
DNA
BIOMASS
CARBON
DILUTION
IMPACTS
TAQMAN
典型有机固废厌氧消化微生物研究现状与发展方向
期刊论文
生物工程学报, 2021, 卷号: 37, 期号: 10, 页码: 3425-3438
Authors:
杨兴盛
;
王尚
;
何晴
;
王朱珺
;
张照婧
;
姜成英
;
马黎萍
;
刘贤伟
;
胡宝兰
;
李咏梅
;
邓晔
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Submit date:2021/12/30
微生物组
厌氧消化
有机固废
互营代谢
互作
High-Throughput Single-Cell Technology Reveals the Contribution of Horizontal Gene Transfer to Typical Antibiotic Resistance Gene Dissemination in Wastewater Treatment Plants
期刊论文
ENVIRONMENTAL SCIENCE & TECHNOLOGY, 2021, 卷号: 55, 期号: 17, 页码: 11824-11834
Authors:
Wei, Ziyan
;
Feng, Kai
;
Wang, Zhujun
;
Zhang, Yu
;
Yang, Min
;
Zhu, Yong-Guan
;
Virta, Marko P. J.
;
Deng, Ye
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Submit date:2021/12/23
antibiotic resistance genes
horizontal gene transfer
vertical gene transfer
bacterial hosts
epicPCR
Sampling cores and sequencing depths affected the measurement of microbial diversity in soil quadrats
期刊论文
SCIENCE OF THE TOTAL ENVIRONMENT, 2021, 卷号: 767, 页码: -
Authors:
Li, Shuzhen
;
Deng, Ye
;
Du, Xiongfeng
;
Feng, Kai
;
Wu, Yueni
;
He, Qing
;
Wang, Zhujun
;
Liu, Yangying
;
Wang, Danrui
;
Peng, Xi
;
Zhang, Zhaojing
;
Escalas, Arthur
;
Qu, Yuanyuan
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Submit date:2021/12/23
Sampling strategy
alpha diversity
Pooling
Biological replicate
Common species
Hill number
Effects of graphene oxide on PCR amplification for microbial community survey
期刊论文
BMC MICROBIOLOGY, 2020, 卷号: 20, 期号: 1, 页码: 1-11
Authors:
Li, Shuzhen
;
Wang, Zhujun
;
Wang, Yuanyuan
;
Song, Maoyong
;
Lu, Guangxin
;
Dang, Ning
;
Yin, Huaqun
;
Qu, Yuanyuan
;
Deng, Ye
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Submit date:2021/09/15
Oxidized graphene
Bacteria
Fungi
Chimera
Community composition
ARDEP, a Rapid Degenerate Primer Design Pipeline Based onk-mers for Amplicon Microbiome Studies
期刊论文
INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH, 2020, 卷号: 17, 期号: 16, 页码: 1-9
Authors:
Wu, Yueni
;
Feng, Kai
;
Wei, Ziyan
;
Wang, Zhujun
;
Deng, Ye
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Submit date:2021/09/15
bioinformatic program
primer design
k-mer
analysis platform
primer assessment
农牧交错带草地土壤剖面微生物总量、多样性和互作网络的垂直分布特征
期刊论文
微生物学通报, 2020, 卷号: 47, 期号: 09, 页码: 2789-2806
Authors:
杜雄峰
;
厉舒祯
;
冯凯
;
何晴
;
王朱珺
;
吴悦妮
;
王丹蕊
;
彭玺
;
王尚
;
邓晔
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Submit date:2021/07/16
农牧交错带
草地
原核微生物
多样性
分子生态网络
土壤深度
16S/18S/ITS扩增子高通量测序引物的生物信息学评估和改进
期刊论文
微生物学通报, 2020, 卷号: 47, 期号: 09, 页码: 2897-2912
Authors:
吴悦妮
;
冯凯
;
厉舒祯
;
王朱珺
;
张照婧
;
邓晔
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Submit date:2021/07/16
扩增子测序
16S rRNA基因
ITS基因
18S rRNA基因
PCR扩增
引物
引物覆盖度
引物特异性
扩增产物片段长度
Niche width of above- and below-ground organisms varied in predicting biodiversity profiling along a latitudinal gradient
期刊论文
MOLECULAR ECOLOGY, 2020, 卷号: 29, 期号: 10, 页码: 1890-1902
Authors:
Feng, Kai
;
Wang, Shang
;
Wei, Ziyan
;
Wang, Zhujun
;
Zhang, Zhaojing
;
Wu, Yueni
;
Zhang, Yuguang
;
Deng, Ye
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Submit date:2021/09/15
above- and below-ground ecology
biodiversity profiling
biogeographical distribution
forest ecosystem
niche width model
plants and microbes
Steeper spatial scaling patterns of subsoil microbiota are shaped by deterministic assembly process
期刊论文
MOLECULAR ECOLOGY, 2020, 卷号: 30, 期号: 4, 页码: 1072-1085
Authors:
Du, Xiongfeng
;
Deng, Ye
;
Li, Shuzhen
;
Escalas, Arthur
;
Feng, Kai
;
He, Qing
;
Wang, Zhujun
;
Wu, Yueni
;
Wang, Danrui
;
Peng, Xi
;
Wang, Shang
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Submit date:2021/09/15
assembly mechanism
biodiversity
biogeography
grassland
prokaryote
spatial scaling